Softwares

Algorithms for the modeling and processing of CRISPR screens:

Guide-RNA design algorithms:

Algorithms for modeling single-cell CRISPR screens:

  • scMAGeCK*: Linking genotypes with multiple phenotypes in single-cell RNA-seq based CRISPR screens. [Genome Biology 2020][code]

Algorithms for RNA-seq transcriptome assembly:

*  Softwares where we are the major contributors.